Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1173_KQG-N1-BDNA-01_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_KQG-N1-BDNA-01_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_KQG-N1-BDNA-01_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_KQG-N1-BDNA-01_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73296151 total, 62077 skipped (flags/unmapped)
Fragments: 36718090 total (36465726 tlen-paired, 5062 hash-paired, 354 singletons, 16068 discordant, 230880 orphans, 14564 too large [>5000 bp], 11580326 duplicates)
Reads: 79958084 total, 48328 skipped (flags/unmapped)
Fragments: 40062215 total (39814529 tlen-paired, 4427 hash-paired, 407 singletons, 11215 discordant, 231637 orphans, 8685 too large [>5000 bp], 12402251 duplicates)
Reads: 85030014 total, 55527 skipped (flags/unmapped)
Fragments: 42605963 total (42305528 tlen-paired, 5510 hash-paired, 375 singletons, 16550 discordant, 278000 orphans, 20468 too large [>5000 bp], 13515278 duplicates)
Reads: 85554086 total, 84787 skipped (flags/unmapped)
Fragments: 42931431 total (42333295 tlen-paired, 5037 hash-paired, 333 singletons, 109086 discordant, 483680 orphans, 45225 too large [>5000 bp], 13659090 duplicates)