Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BSNE-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_BSNE-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BSNE-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BSNE-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66199184 total, 45818 skipped (flags/unmapped)
Fragments: 33257670 total (32860655 tlen-paired, 2927 hash-paired, 330 singletons, 12444 discordant, 381314 orphans, 9835 too large [>5000 bp], 11762180 duplicates)
Reads: 70938108 total, 41229 skipped (flags/unmapped)
Fragments: 35640768 total (35227186 tlen-paired, 2807 hash-paired, 422 singletons, 8946 discordant, 401407 orphans, 8586 too large [>5000 bp], 12236928 duplicates)
Reads: 70619003 total, 41005 skipped (flags/unmapped)
Fragments: 35482973 total (35058160 tlen-paired, 4054 hash-paired, 311 singletons, 10783 discordant, 409665 orphans, 11014 too large [>5000 bp], 12596509 duplicates)
Reads: 78436377 total, 70097 skipped (flags/unmapped)
Fragments: 39582135 total (38319483 tlen-paired, 3057 hash-paired, 391 singletons, 252729 discordant, 1006475 orphans, 104438 too large [>5000 bp], 14011632 duplicates)