Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BPB8-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BPB8-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BPB8-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BPB8-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88552087 total, 61873 skipped (flags/unmapped)
Fragments: 44464969 total (43985737 tlen-paired, 2718 hash-paired, 499 singletons, 13212 discordant, 462803 orphans, 11789 too large [>5000 bp], 17225823 duplicates)
Reads: 95182843 total, 52541 skipped (flags/unmapped)
Fragments: 47804567 total (47292739 tlen-paired, 2617 hash-paired, 566 singletons, 9729 discordant, 498916 orphans, 10325 too large [>5000 bp], 18061366 duplicates)
Reads: 103742167 total, 58341 skipped (flags/unmapped)
Fragments: 52099215 total (51508921 tlen-paired, 6286 hash-paired, 404 singletons, 13564 discordant, 570040 orphans, 27920 too large [>5000 bp], 20202141 duplicates)
Reads: 105347990 total, 92385 skipped (flags/unmapped)
Fragments: 53146475 total (51528079 tlen-paired, 2806 hash-paired, 451 singletons, 318593 discordant, 1296546 orphans, 129826 too large [>5000 bp], 20534803 duplicates)