Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_D1G-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_D1G-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_D1G-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_D1G-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74228808 total, 56592 skipped (flags/unmapped)
Fragments: 37294630 total (36837264 tlen-paired, 3953 hash-paired, 455 singletons, 14397 discordant, 438561 orphans, 10986 too large [>5000 bp], 14588629 duplicates)
Reads: 79029902 total, 50201 skipped (flags/unmapped)
Fragments: 39709168 total (39238110 tlen-paired, 3779 hash-paired, 431 singletons, 9970 discordant, 456878 orphans, 9337 too large [>5000 bp], 15045305 duplicates)
Reads: 86519431 total, 49494 skipped (flags/unmapped)
Fragments: 43476323 total (42928563 tlen-paired, 3906 hash-paired, 369 singletons, 15491 discordant, 527994 orphans, 22827 too large [>5000 bp], 17001257 duplicates)
Reads: 88576102 total, 82840 skipped (flags/unmapped)
Fragments: 44718368 total (43238236 tlen-paired, 3667 hash-paired, 407 singletons, 291665 discordant, 1184393 orphans, 120663 too large [>5000 bp], 17420177 duplicates)