Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3RW-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3RW-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3RW-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3RW-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96522187 total, 62362 skipped (flags/unmapped)
Fragments: 48350647 total (48063240 tlen-paired, 4210 hash-paired, 389 singletons, 16112 discordant, 266696 orphans, 12808 too large [>5000 bp], 17476831 duplicates)
Reads: 102358276 total, 55500 skipped (flags/unmapped)
Fragments: 51274697 total (50990433 tlen-paired, 3074 hash-paired, 492 singletons, 10510 discordant, 270188 orphans, 12031 too large [>5000 bp], 18137772 duplicates)
Reads: 113111930 total, 91910 skipped (flags/unmapped)
Fragments: 56751523 total (56008690 tlen-paired, 4744 hash-paired, 430 singletons, 138929 discordant, 598730 orphans, 58067 too large [>5000 bp], 20604768 duplicates)
Reads: 112070389 total, 56474 skipped (flags/unmapped)
Fragments: 56147260 total (55797912 tlen-paired, 3941 hash-paired, 453 singletons, 16018 discordant, 328936 orphans, 24392 too large [>5000 bp], 20342826 duplicates)