Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_2QH-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_2QH-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2QH-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2QH-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61867813 total, 45500 skipped (flags/unmapped)
Fragments: 31098736 total (30695432 tlen-paired, 2524 hash-paired, 326 singletons, 10893 discordant, 389561 orphans, 7364 too large [>5000 bp], 11374387 duplicates)
Reads: 72397529 total, 42672 skipped (flags/unmapped)
Fragments: 36394977 total (35918112 tlen-paired, 5188 hash-paired, 303 singletons, 10806 discordant, 460568 orphans, 12887 too large [>5000 bp], 13302278 duplicates)
Reads: 65870997 total, 39141 skipped (flags/unmapped)
Fragments: 33113131 total (32695008 tlen-paired, 1754 hash-paired, 383 singletons, 7527 discordant, 408459 orphans, 7218 too large [>5000 bp], 11743628 duplicates)
Reads: 73398063 total, 71172 skipped (flags/unmapped)
Fragments: 37098619 total (35739225 tlen-paired, 2395 hash-paired, 360 singletons, 267872 discordant, 1088767 orphans, 109390 too large [>5000 bp], 13472896 duplicates)