#!/bin/bash
### ---
### name: 'SOMATIC_CNV_REF_BUILDER:SOMA_CNV_BUILD_REFERENCE (build_reference)'
### container: '292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260604-3cb5ec5'
### outputs:
### - 'batch_reference.parquet'
### - 'sex_calls.csv'
### - 'feature_stats.csv'
### - 'versions.yml'
### ...
set -e
set -u
NXF_DEBUG=${NXF_DEBUG:=0}; [[ $NXF_DEBUG > 1 ]] && set -x
NXF_ENTRY=${1:-nxf_main}

nxf_tree() {
    local pid=$1

    declare -a ALL_CHILDREN
    while read P PP;do
        ALL_CHILDREN[$PP]+=" $P"
    done < <(ps -e -o pid= -o ppid=)

    pstat() {
        local x_pid=$1
        local STATUS=$(2> /dev/null < /proc/$1/status grep -E 'Vm|ctxt')

        if [ $? = 0 ]; then
        local  x_vsz=$(echo "$STATUS" | grep VmSize | awk '{print $2}' || echo -n '0')
        local  x_rss=$(echo "$STATUS" | grep VmRSS | awk '{print $2}' || echo -n '0')
        local x_peak=$(echo "$STATUS" | grep -E 'VmPeak|VmHWM' | sed 's/^.*:\s*//' | sed 's/[\sa-zA-Z]*$//' | tr '\n' ' ' || echo -n '0 0')
        local x_pmem=$(awk -v rss=$x_rss -v mem_tot=$mem_tot 'BEGIN {printf "%.0f", rss/mem_tot*100*10}' || echo -n '0')
        local vol_ctxt=$(echo "$STATUS" | grep '\bvoluntary_ctxt_switches' | awk '{print $2}' || echo -n '0')
        local inv_ctxt=$(echo "$STATUS" | grep '\bnonvoluntary_ctxt_switches' | awk '{print $2}' || echo -n '0')
        cpu_stat[x_pid]="$x_pid $x_pmem $x_vsz $x_rss $x_peak $vol_ctxt $inv_ctxt"
        fi
    }

    pwalk() {
        pstat $1
        for i in ${ALL_CHILDREN[$1]:=}; do pwalk $i; done
    }

    pwalk $1
}

nxf_stat() {
    cpu_stat=()
    nxf_tree $1

    declare -a sum=(0 0 0 0 0 0 0 0)
    local pid
    local i
    for pid in "${!cpu_stat[@]}"; do
        local row=(${cpu_stat[pid]})
        [ $NXF_DEBUG = 1 ] && echo "++ stat mem=${row[*]}"
        for i in "${!row[@]}"; do
        if [ $i != 0 ]; then
            sum[i]=$((sum[i]+row[i]))
        fi
        done
    done

    [ $NXF_DEBUG = 1 ] && echo -e "++ stat SUM=${sum[*]}"

    for i in {1..7}; do
        if [ ${sum[i]} -lt ${cpu_peak[i]} ]; then
            sum[i]=${cpu_peak[i]}
        else
            cpu_peak[i]=${sum[i]}
        fi
    done

    [ $NXF_DEBUG = 1 ] && echo -e "++ stat PEAK=${sum[*]}\n"
    nxf_stat_ret=(${sum[*]})
}

nxf_mem_watch() {
    set -o pipefail
    local pid=$1
    local trace_file=.command.trace
    local count=0;
    declare -a cpu_stat=(0 0 0 0 0 0 0 0)
    declare -a cpu_peak=(0 0 0 0 0 0 0 0)
    local mem_tot=$(< /proc/meminfo grep MemTotal | awk '{print $2}')
    local timeout
    local DONE
    local STOP=''

    [ $NXF_DEBUG = 1 ] && nxf_sleep 0.2 && ps fx

    while true; do
        nxf_stat $pid
        if [ $count -lt 10 ]; then timeout=1;
        elif [ $count -lt 120 ]; then timeout=5;
        else timeout=30;
        fi
        read -t $timeout -r DONE || true
        [[ $DONE ]] && break
        if [ ! -e /proc/$pid ]; then
            [ ! $STOP ] && STOP=$(nxf_date)
            [ $(($(nxf_date)-STOP)) -gt 10000 ] && break
        fi
        count=$((count+1))
    done

    printf "%s\n" \
        "%mem=${nxf_stat_ret[1]}" \
        "vmem=${nxf_stat_ret[2]}" \
        "rss=${nxf_stat_ret[3]}" \
        "peak_vmem=${nxf_stat_ret[4]}" \
        "peak_rss=${nxf_stat_ret[5]}" \
        "vol_ctxt=${nxf_stat_ret[6]}" \
        "inv_ctxt=${nxf_stat_ret[7]}" >> "$trace_file" || >&2 echo "Error: Failed to append to file: $trace_file"
}

nxf_write_trace() {
    printf "%s\n" \
        "nextflow.trace/v2" \
        "realtime=$wall_time" \
        "%cpu=$ucpu" \
        "cpu_model=$cpu_model" \
        "rchar=${io_stat1[0]}" \
        "wchar=${io_stat1[1]}" \
        "syscr=${io_stat1[2]}" \
        "syscw=${io_stat1[3]}" \
        "read_bytes=${io_stat1[4]}" \
        "write_bytes=${io_stat1[5]}" >| "$trace_file" || >&2 echo "Error: Failed to write to file: $trace_file"
}

nxf_trace_mac() {
    local start_millis=$(nxf_date)

    /bin/bash -Ceuo pipefail .command.sh

    local end_millis=$(nxf_date)
    local wall_time=$((end_millis-start_millis))
    local ucpu=''
    local cpu_model=''
    local io_stat1=('' '' '' '' '' '')
    nxf_write_trace
}

nxf_fd() {
    local FD=11
    while [ -e /proc/$$/fd/$FD ]; do FD=$((FD+1)); done
    echo $FD
}

nxf_trace_linux() {
    local pid=$$
    command -v ps &>/dev/null || { >&2 echo "Command 'ps' required by nextflow to collect task metrics cannot be found"; exit 1; }
    local num_cpus=$(< /proc/cpuinfo grep '^processor' -c)
    local cpu_model=$(< /proc/cpuinfo grep '^model name' | head -n 1 | awk 'BEGIN{FS="\t: "} { print $2 }')
    local tot_time0=$(grep '^cpu ' /proc/stat | awk '{sum=$2+$3+$4+$5+$6+$7+$8+$9; printf "%.0f",sum}')
    local cpu_time0=$(2> /dev/null < /proc/$pid/stat awk '{printf "%.0f", ($16+$17)*10 }' || echo -n 'X')
    local io_stat0=($(2> /dev/null < /proc/$pid/io sed 's/^.*:\s*//' | head -n 6 | tr '\n' ' ' || echo -n '0 0 0 0 0 0'))
    local start_millis=$(nxf_date)
    trap 'kill $mem_proc' ERR
    
    /bin/bash -Ceuo pipefail .command.sh &
    local task=$!

    mem_fd=$(nxf_fd)
    eval "exec $mem_fd> >(nxf_mem_watch $task)"
    local mem_proc=$!

    wait $task

    local end_millis=$(nxf_date)
    local tot_time1=$(grep '^cpu ' /proc/stat | awk '{sum=$2+$3+$4+$5+$6+$7+$8+$9; printf "%.0f",sum}')
    local cpu_time1=$(2> /dev/null < /proc/$pid/stat awk '{printf "%.0f", ($16+$17)*10 }' || echo -n 'X')
    local ucpu=$(awk -v p1=$cpu_time1 -v p0=$cpu_time0 -v t1=$tot_time1 -v t0=$tot_time0 -v n=$num_cpus 'BEGIN { pct=(p1-p0)/(t1-t0)*100*n; printf("%.0f", pct>0 ? pct : 0) }' )

    local io_stat1=($(2> /dev/null < /proc/$pid/io sed 's/^.*:\s*//' | head -n 6 | tr '\n' ' ' || echo -n '0 0 0 0 0 0'))
    local i
    for i in {0..5}; do
        io_stat1[i]=$((io_stat1[i]-io_stat0[i]))
    done

    local wall_time=$((end_millis-start_millis))
    [ $NXF_DEBUG = 1 ] && echo "+++ STATS %CPU=$ucpu TIME=$wall_time I/O=${io_stat1[*]}"

    printf "%s\n" \
        "nextflow.trace/v2" \
        "realtime=$wall_time" \
        "%cpu=$ucpu" \
        "cpu_model=$cpu_model" \
        "rchar=${io_stat1[0]}" \
        "wchar=${io_stat1[1]}" \
        "syscr=${io_stat1[2]}" \
        "syscw=${io_stat1[3]}" \
        "read_bytes=${io_stat1[4]}" \
        "write_bytes=${io_stat1[5]}" >| "$trace_file" || >&2 echo "Error: Failed to write to file: $trace_file"

    [ -e /proc/$mem_proc ] && eval "echo 'DONE' >&$mem_fd" || true
    wait $mem_proc 2>/dev/null || true
    while [ -e /proc/$mem_proc ]; do nxf_sleep 0.1; done
}

nxf_trace() {
    local trace_file=.command.trace
    touch $trace_file
    if [[ $(uname) = Darwin ]]; then
        nxf_trace_mac
    else
        nxf_trace_linux
    fi
}
# bash helper functions
nxf_cp_retry() {
    local max_attempts=1
    local timeout=10
    local attempt=0
    local exitCode=0
    while (( $attempt < $max_attempts ))
    do
      if "$@"
        then
          return 0
      else
        exitCode=$?
      fi
      if [[ $exitCode == 0 ]]
      then
        break
      fi
      nxf_sleep $timeout
      attempt=$(( attempt + 1 ))
      timeout=$(( timeout * 2 ))
    done
}

nxf_parallel() {
    IFS=$'\n'
    local cmd=("$@")
    local cpus=$(nproc 2>/dev/null || < /proc/cpuinfo grep '^process' -c)
    local max=$(if (( cpus>4 )); then echo 4; else echo $cpus; fi)
    local i=0
    local pid=()
    (
    set +u
    while ((i<${#cmd[@]})); do
        local copy=()
        for x in "${pid[@]}"; do
          # if the process exist, keep in the 'copy' array, otherwise wait on it to capture the exit code
          # see https://github.com/nextflow-io/nextflow/pull/4050
          [[ -e /proc/$x ]] && copy+=($x) || wait $x
        done
        pid=("${copy[@]}")

        if ((${#pid[@]}>=$max)); then
          nxf_sleep 0.2
        else
          eval "${cmd[$i]}" &
          pid+=($!)
          ((i+=1))
        fi
    done
    for p in "${pid[@]}"; do
        wait $p
    done
    )
    unset IFS
}

# aws helper for s5cmd
nxf_s3_upload() {
    local name=$1
    local s3path=$2
    if [[ "$name" == - ]]; then
      local tmp=$(nxf_mktemp)
      cp /dev/stdin $tmp/$name
      /opt/s5cmd/bin/s5cmd --log error cp --storage-class STANDARD $tmp/$name "$s3path"
    elif [[ -d "$name" ]]; then
      /opt/s5cmd/bin/s5cmd --log error cp --storage-class STANDARD "$name/" "$s3path/$name/"
    else
      /opt/s5cmd/bin/s5cmd --log error cp --storage-class STANDARD "$name" "$s3path/$name"
    fi
}

nxf_s3_download() {
    local source=$1
    local target=$2
    echo "  Downloading: $source"
    local file_name=$(basename $1)
    local is_dir=$(/opt/s5cmd/bin/s5cmd ls $source | grep -F "DIR  ${file_name}/" -c)
    if [[ $is_dir == 1 ]]; then
        /opt/s5cmd/bin/s5cmd --log error cp "$source/*" "$target"
    else
        /opt/s5cmd/bin/s5cmd --log error cp "$source" "$target"
    fi
}

nxf_sleep() {
  sleep $1 2>/dev/null || sleep 1;
}

nxf_date() {
    local ts=$(date +%s%3N);
    if [[ ${#ts} == 10 ]]; then echo ${ts}000
    elif [[ $ts == *%3N ]]; then echo ${ts/\%3N/000}
    elif [[ $ts == *3N ]]; then echo ${ts/3N/000}
    elif [[ ${#ts} == 13 ]]; then echo $ts
    else echo "Unexpected timestamp value: $ts"; exit 1
    fi
}

nxf_env() {
    echo '============= task environment ============='
    env | sort | sed "s/\(.*\)AWS\(.*\)=\(.\{6\}\).*/\1AWS\2=\3xxxxxxxxxxxxx/"
    echo '============= task output =================='
}

nxf_kill() {
    declare -a children
    while read P PP;do
        children[$PP]+=" $P"
    done < <(ps -e -o pid= -o ppid=)

    kill_all() {
        [[ $1 != $$ ]] && kill $1 2>/dev/null || true
        for i in ${children[$1]:=}; do kill_all $i; done
    }

    kill_all $1
}

nxf_mktemp() {
    local base=${1:-/tmp}
    mkdir -p "$base"
    if [[ $(uname) = Darwin ]]; then mktemp -d $base/nxf.XXXXXXXXXX
    else TMPDIR="$base" mktemp -d -t nxf.XXXXXXXXXX
    fi
}

nxf_fs_copy() {
  local source=$1
  local target=$2
  local basedir=$(dirname $1)
  mkdir -p $target/$basedir
  cp -fRL $source $target/$basedir
}

nxf_fs_move() {
  local source=$1
  local target=$2
  local basedir=$(dirname $1)
  mkdir -p $target/$basedir
  mv -f $source $target/$basedir
}

nxf_fs_rsync() {
  rsync -rRl $1 $2
}

nxf_fs_rclone() {
  rclone copyto $1 $2/$1
}

nxf_fs_fcp() {
  fcp $1 $2/$1
}

on_exit() {
    local last_err=$?
    local exit_status=${nxf_main_ret:=0}
    [[ ${exit_status} -eq 0 && ${nxf_unstage_ret:=0} -ne 0 ]] && exit_status=${nxf_unstage_ret:=0}
    [[ ${exit_status} -eq 0 && ${last_err} -ne 0 ]] && exit_status=${last_err}
    printf -- $exit_status | nxf_s3_upload - s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b9612ce73e6ae99b1d099298743176/.exitcode || true
    set +u
    rm -rf $NXF_SCRATCH || true
    exit $exit_status
}

on_term() {
    set +e
    [[ "$pid" ]] && nxf_kill $pid
}

nxf_launch() {
    /bin/bash -Ceuo pipefail .command.run nxf_trace
}

nxf_stage() {
    true
    # stage input files
    downloads=(true)
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/15bd5f841830fdc9f8debb952cf8f8/1136_2FB-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2FB-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/4dee2d4e6082025d52e12332bbb222/1136_2RB-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2RB-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/90316ee50cdb58167cd6221a77f7bd/1029_BRU2-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BRU2-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/a2afa3e67025033ff4df6c674e11fe/1029_2ZR-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_2ZR-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/41e25b2fd8c5f70a39e5483619399f/1029_MKP-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_MKP-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/176076e9fefe91c58eb86a2bfeef74/1136_2PG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2PG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/37f4d6fc1f25d5e239bcfad41c9a76/1136_2X3-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2X3-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/32f34cb9a586871bcf37b492f32b96/1029_LGO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_LGO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/762bddbc427c236a8d113a146df113/1029_D1G-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_D1G-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/5239ac876e4a45e4c779f8858ef99d/1029_BAMB-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BAMB-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/00d175b27b941d654e07817236ed69/1136_34R-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_34R-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/ff2f447becfaf0427eb24aa55484bc/1136_3EG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_3EG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/aea35a2aa7a02d7207e41b3769f3c6/1029_3SA-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_3SA-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/1ddb9d3bac028603eb2a9e0bc34a89/1029_3OA-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_3OA-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/6664200ce090be6a389f07941aa1ed/1029_BDHI-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BDHI-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/fe561ce018eec6ec02ded9fb3f87a0/1136_2SK-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2SK-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/ddb609eed95b0c138f8b31660e7358/1136_17X-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_17X-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/0a9facddbbcaf7b179dce79135a317/1136_2TX-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2TX-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/97830cf4897bc0151e26a9355c0a12/1029_BHJD-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BHJD-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/253160f989c35c67ec3cbb7487b588/1136_3RW-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_3RW-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/7e975876f15ebc0ea0040d059fdab3/1136_1ME-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1ME-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/4e0f77c6f476d0987810168eef4a02/1136_37O-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_37O-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/aca95aaeb46490f61e471cf834ee89/1136_3DY-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_3DY-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/b52c94bc45fdc6b57f4004230d6d6d/1136_0HE-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_0HE-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/cf7c63a7c0ed19c4ae171d291d240c/1136_08E-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_08E-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/b5ea34978b24a23d2b5bcb62c9f40a/1029_HGR-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_HGR-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/345765ad77aef525cfac4bd55869be/1029_5KP-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_5KP-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/122a08f536db19faf737ab3503be5b/1029_MHV-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_MHV-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/53d3582a79d0aa74d97ff8607dc78b/1136_19S-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_19S-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/d9fe7b452160ed05754e8d6d4c080d/1136_33P-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_33P-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/44b13bc24abbd22569e6f7edeb538a/1029_U0A-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_U0A-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/0418a802bfad8591f68afe46c581be/1136_1HP-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1HP-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/0e1b5c4b514dd98612700ff7464ba2/1136_0R6-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_0R6-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/967639093022ba98b7524faf1f6d76/1029_BTBG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BTBG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/84d95b535c57310dfe8e4e870e376a/1136_1Z7-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1Z7-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/e07b8cd865bda8eacd98fdeab76c7f/1136_002-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_002-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/a51872b4aa8360c1ee41f08798438a/1136_2OL-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2OL-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c46fdaf26e579395751fdc784e74d9/1136_1H5-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1H5-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/72360d340c02495ab37c29cbe7a89d/1029_BEZ8-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BEZ8-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/65a500ff6a8888b5d916cad80ab335/1136_3DG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_3DG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/fd9159b9e840b6563c1f5b0b2742b9/1136_36B-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_36B-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/8843b6b9a3b08c0528b8a0c78e69e6/1136_3DL-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_3DL-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/9907747f943dfff8870c12f497ae42/1029_VB-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_VB-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/504766b8ff4e9ceda93014c855584e/1029_EBU-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_EBU-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/b7403aadd2eb0c2e5989f832f63171/1029_2RG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_2RG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/4ef399192e57630c51aace4bd743f5/1136_2IL-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2IL-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/7bf061804ee6d34d210678f3fb2207/1029_E5O-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_E5O-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/0f9f6ff81d9d06942a0bce00c29ba5/1136_1RX-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1RX-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/cbe904fa1cfd5b97cf04d4c56c577c/1136_0NF-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_0NF-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/0a718a9b621dc42dc25c346f954571/1136_2ZF-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2ZF-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b9612ce73e6ae99b1d099298743176/.command.sh .command.sh")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/588ab18bf6cae7a7b750c68e3ecfa2/1136_0QS-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_0QS-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/c98b8de490f9fc4ab2892fd022164a/1029_TA7-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_TA7-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/921b297e31e111addce0e768686cf7/1029_4EU-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_4EU-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/0e3df28b25dbd36d277effb5ad0e3c/1136_303-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_303-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/47fe63d64b94781b40ccc204c9c205/1136_0G3-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_0G3-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/bf23f00f33368a3747fa0c092b27ac/1136_2V0-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2V0-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/e04f56a09f9154119641c5dd8e5222/1136_1NE-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1NE-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/18911ad31f9de0fcb029914bf27f5e/1136_32O-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_32O-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/d91751a2cd6a136f8595646f608859/1136_2KZ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2KZ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/aa0b31a429d01b7febf229c6876327/1029_BDV5-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BDV5-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/702a609c6952f91227c8ac5c11c288/1136_4R0-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_4R0-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/2116f1ebb1622670b8aff4703e6105/1136_4QO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_4QO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/7a90965e8eeea20e3c58095cdfcf35/1029_BSNE-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BSNE-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/6ff9a8e91c83bea0afbae1ffef088f/1029_BMYS-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BMYS-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/9a892f750013eefdf2111edbf7996c/1136_2GX-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2GX-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/6d506d4ef577eb9d0e14c6ee3f27df/1136_3LK-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_3LK-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/fcc69dd370e8bc738ed405ac751ae5/1136_2NU-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2NU-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/2df7d350381d889bbd6da5326db014/1173_LV7-N1-BDNA-01_A23KFG7LT4_1_probes.tsv.gz 1173_LV7-N1-BDNA-01_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/843b5fbcfadb4a4eb63f21d6148504/1136_2IP-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2IP-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/4263b1c8f5bda0c6931e1b2f9d2841/1029_JOY-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_JOY-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/4b6cae36e58d61abfdadf832520b23/1136_2J1-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2J1-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/5a2c45c7fbe5ea1226a9c840e09eee/1136_20Z-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_20Z-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/25e4906421e568519d5d961be70a0d/1029_1I1-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_1I1-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/ee24f44c16480c0bb34a265f4d6143/1136_2SZ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2SZ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/84bd05ca8ba27fcd992fe73bc5cc50/1136_2UQ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2UQ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/f8687a44b5520ea142befd6f8a598e/1136_0YR-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_0YR-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/ff669ea90ed97dd0e54d0f27589861/1029_GEO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_GEO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/65dcdb7c1ef2d12195ad9acd61e10a/1136_2VD-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2VD-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/55bb7c92dffe25e68df40f9de8b81e/1029_BSJ7-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BSJ7-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/2662c483330322a31f8750f3d2a025/1136_7AL-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_7AL-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/79f334934c8f69e9b815708e54e772/1173_Q7O-N1-BDNA-01_A23KFG7LT4_1_probes.tsv.gz 1173_Q7O-N1-BDNA-01_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/83ecd6c3f8e9fb843a50549ca0e59a/1136_1N2-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1N2-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/2818088a6ff9653b8b980fa3d71e27/1029_D5L-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_D5L-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/7b35162c08aabcc7f6ffa2e2209cf4/1029_NOY-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_NOY-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/e82acf2eddf8bcf9e27495791b89d2/1029_SH1-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_SH1-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/9b2b76218473ff0eeb0f6af33ef390/1029_N4U-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_N4U-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/82a8572ee69db5eecec5e06684431e/1136_7K3-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_7K3-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/f404f7c7717f3516ff2bc09976c0e6/1029_BA1G-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BA1G-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/af63175c9e668a90178de212c1f3ea/1136_2X8-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2X8-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/7bccdad425ae7393775a00f58b8349/1136_36K-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_36K-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/ad07027092412bccff20873e6ea6ec/1136_1ZF-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1ZF-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/e443042a6aa33e5f04b10c46b2baa9/1136_22-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_22-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/4015f60f3e966f39f7bfc68dbd3e33/1136_391-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_391-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/49d3389637fe3649d3d9941622a9aa/1136_019-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_019-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/10930eaa82ec8a8caa966045ee2f1b/1136_30F-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_30F-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/7874ce9d5665147924dae50a682c78/1029_Z0K-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_Z0K-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/611c1860bdf22db425e9caf7400f7a/1136_0YC-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_0YC-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/62fa4aa9bc322ecd1589b7f23eb60d/1136_281-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_281-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/380753e4391d0ac2f9b7fbaecda018/1136_2ZX-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2ZX-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/3e4d1a527df0eadf556fb838021d39/1136_2I7-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2I7-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/204302f0650182c83a82069210b875/1029_BBUO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BBUO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/242375fe9e1ac975d3296e5dc0ede6/1029_BPB8-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BPB8-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/9e34e1b55aa9fa12b772e0e64bf586/1136_2RJ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2RJ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/bf16730fc22cf11b0932d07578450e/1029_QEF-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_QEF-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/cf7379812e3963e005c092cfa64c4b/1029_BN1U-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BN1U-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/0c01e42fe6ddf1e3df9bd8e912d3a2/1136_43A-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_43A-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/3e5a31267857712ba4d6a29e992c47/1136_08G-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_08G-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/9fd134b192063e468500d83b3fa5e0/1136_1E0-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1E0-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/65753840041bcfc6362b4b97243371/1136_1DO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1DO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/1e3d3046bc45ff1c34709e635c79ad/1136_2LO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2LO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/a091efabbfc8c61fbc46bca3e1807f/1136_1ZT-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1ZT-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/325921d15cc0b9f51ace51d9ff66d9/1136_355-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_355-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/d4c315da034e8bd0492a594cbba8ab/1136_3BO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_3BO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/2823499cd2d2b4b9876709bf1ea5c9/1136_1RI-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1RI-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/8f59960739011a6142b03342e63bb5/1136_31I-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_31I-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/e6a4cdf1d096180e3174bef5384658/1136_36E-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_36E-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/64466ad83ce64447855967c7d2d067/1136_0ZS-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_0ZS-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/573e639eb3051e93af51c57964bb12/1136_1AK-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1AK-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/702f09ab9a372aa1a32c37353881fc/1173_RQT-N1-BDNA-01_A23KFG7LT4_1_probes.tsv.gz 1173_RQT-N1-BDNA-01_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/94eb4c82aef26ac633d38ae6dd5cd0/1136_12C-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_12C-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/35df60a110666ebb94e3a661fa2383/1136_201-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_201-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/f2/1611af2c6c90752d6302b4f9f8bd2e/manifest.tsv manifest.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/70ca65b222348a188b0a6af0e3a82d/1136_1J-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1J-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/7262cbc0f993b6b48c0ebeee60ed79/1136_257-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_257-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/a6c1a4666e4992591d500a92e61248/1136_2W2-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2W2-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/e0530269543304a253f3bc0ba4e53e/1136_382-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_382-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/76ef0a78cdfd05790811c8f0965d37/1029_X7W-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_X7W-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b9612ce73e6ae99b1d099298743176/.command.run .command.run")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/3062bd6cd1b3bb1381324cbb40bc9e/1029_BM04-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BM04-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/efe8f72303aef2e8886e7a2e796ef9/1029_O1-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_O1-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/eb59a2c4132852be758abdf0317ef4/1136_1OL-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1OL-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/3dc3207adbe89ed82f6fa14f0bba06/1136_0ET-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_0ET-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2fef20f5f6f9b94cd848fb029d61c4/1136_23Q-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_23Q-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/c7aa5773f50d3afb5605cf92742366/1136_2SB-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2SB-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/0bb98f6609987da02e9d6e063d0e8e/1136_30B-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_30B-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/5807ecb3602d29a5d91e297c3173b0/1136_3FG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_3FG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/67866bbe3c6991b1ec370d4ecb9620/1029_5CB-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_5CB-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/34c0a67fe112d39f534d9fff763c4b/1136_32G-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_32G-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/6fed115da59b27739f2dd7b2e593db/1029_BI1W-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BI1W-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/8b98040d8424f5807d7e1022842861/1136_2U8-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2U8-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/1dd30e938f8b4889580d59ec85ae1e/1029_2PG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_2PG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/f6dcc9072b5ef6795240f5f77b8d00/1029_M7J-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_M7J-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/d08a2ead38ccea16c9cfb0c2c04381/1029_D92-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_D92-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/462b9c2829b33784cd0f4cb15fd3ca/1136_192-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_192-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/e43e3ef5155d1eb7c72bda2f1dc49a/1136_6Q8-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_6Q8-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/6ba8c4fd9a49d9c1c75486ee3fb4a2/1136_3CM-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_3CM-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/efcf3359057ecbdc65da7ab9a46fc6/1136_27L-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_27L-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/8e9619056d6692dad5435913c438d2/1136_0TC-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_0TC-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/894da9e7cbf1d24f9bd243b3208404/1029_BMKP-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BMKP-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/41a7cb2c5e84f234beb0e4bf997b91/1136_2UX-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2UX-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/2535c54719e4f399715cad02941175/1136_0N9-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_0N9-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/97a72f2db17541a3cf3400024f96f7/1136_1QF-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1QF-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/e6f75821731249e4897b83ba1b18e9/1029_BGGP-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BGGP-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/0c4c5fba5887436197bf5d70a27bc3/1029_BB2O-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BB2O-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/846d8a0ad0b3b044e91f0c5d5b16ec/1029_80V-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_80V-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/cc7ad30add934f58e5decc608af2d2/1029_HLV-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_HLV-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/29574bf90debe9dc44f5bdcbd9e064/1136_31A-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_31A-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/d3273293a68b1d8bd4871265e9c65b/1029_BOLT-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BOLT-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/505e568d8ebbbc12ef1629d4a5741e/1029_CE3-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_CE3-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/86d9b94fd78e3bf119fb07ebbb29f7/1136_2I5-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2I5-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/41834799a6528dd241f78fef3fbe02/1029_PLR-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_PLR-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/cbf577ffbbf11786a5f81a58f9a9e0/1029_BAHZ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BAHZ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/561587db2e2459df9a06a38424239e/1136_2OO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2OO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/d247b8c1ce1608e409e721a0f3b1e6/1029_BKQJ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BKQJ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/dc25c56eee7e51ec910c3279ec57eb/1136_4KO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_4KO-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/3f57e55da8c27d3988a3e5063e7667/1029_BA2K-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BA2K-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/51b3efaeedfa61b0db9ec49f6fe6f4/1136_1MZ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_1MZ-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/d6dc5cd153eb2dedc7645ff8ce03ed/1136_0TE-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_0TE-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/c11819ac0b2be9a81f143c79ad1b6d/1136_01E-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_01E-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/8c74e88cca774a640a3966055c7904/1136_74O-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_74O-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/0b993da0f6fcace85251d0db94082f/1136_18S-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_18S-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/815e9898dc8ad1d1d10af7da295e55/1136_5XC-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_5XC-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/905f33dded4219ae8dd586992733da/1173_KQG-N1-BDNA-01_A23KFG7LT4_1_probes.tsv.gz 1173_KQG-N1-BDNA-01_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/087e90c71a7f4c6b347d2ba6aa4cca/1136_02I-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_02I-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/0372382fd717e09b2a2938f95e9f4e/1029_BJNN-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BJNN-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/6b641258b78c1a9ec1290f39844e78/1029_BIG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1029_BIG-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/2aa6ba00902de72be796dcb831930c/1136_01U-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_01U-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/7bd782de08f2e72b3468757c547a31/1136_16Z-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_16Z-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/27ce4923573e647008e982dd85be0b/1136_3AE-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_3AE-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/c1d8c86aa65b7ae1ffbec323cc82cc/1136_3F-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_3F-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/d82913826ee3cf6f807fc06c1b8884/1136_2QH-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2QH-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/bf2ba104a3922f47650975b64f0e2f/1136_2PC-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2PC-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/7529a7145330d7ed65a3f784f755f6/1136_3AW-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_3AW-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/40045a3f1eba3a58c251536bbf92c0/1136_2S-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz 1136_2S-N1-BDNA-1_A23KFG7LT4_1_probes.tsv.gz")
    nxf_parallel "${downloads[@]}"
    echo "==> STAGING COMPLETE (185 inputs)"
    echo ""
}

nxf_unstage_outputs() {
    true
    uploads=()
    IFS=$'\n'
    for name in $(eval "ls -1d batch_reference.parquet sex_calls.csv feature_stats.csv versions.yml" | sort | uniq); do
        uploads+=("nxf_s3_upload '$name' s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b9612ce73e6ae99b1d099298743176")
    done
    unset IFS
    nxf_parallel "${uploads[@]}"
}

nxf_unstage_controls() {
    true
    nxf_s3_upload .command.out s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b9612ce73e6ae99b1d099298743176 || true
    nxf_s3_upload .command.err s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b9612ce73e6ae99b1d099298743176 || true
    nxf_s3_upload .command.trace s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b9612ce73e6ae99b1d099298743176 || true
}

nxf_unstage() {
    if [[ ${nxf_main_ret:=0} == 0 ]]; then
        (set -e -o pipefail; (nxf_unstage_outputs | tee -a .command.out) 3>&1 1>&2 2>&3 | tee -a .command.err)
        nxf_unstage_ret=$?
    fi
    nxf_unstage_controls
}

nxf_main() {
    trap on_exit EXIT
    trap on_term TERM INT USR2
    trap '' USR1

    [[ "${NXF_CHDIR:-}" ]] && cd "$NXF_CHDIR"
    NXF_SCRATCH="$(set +u; nxf_mktemp /tmp)"
    [[ $NXF_DEBUG > 0 ]] && nxf_env
    echo start | nxf_s3_upload - s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b9612ce73e6ae99b1d099298743176/.command.begin
    set +u
    set -u
    [[ $NXF_SCRATCH ]] && cd $NXF_SCRATCH
    export NXF_TASK_WORKDIR="$PWD"
    nxf_stage

    set +e
    (set -o pipefail; (nxf_launch | tee .command.out) 3>&1 1>&2 2>&3 | tee .command.err) &
    pid=$!
    wait $pid || nxf_main_ret=$?
    nxf_unstage
}

$NXF_ENTRY