Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_X7W-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_X7W-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_X7W-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_X7W-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74898195 total, 51172 skipped (flags/unmapped)
Fragments: 37523228 total (37288611 tlen-paired, 3363 hash-paired, 419 singletons, 10895 discordant, 219940 orphans, 10463 too large [>5000 bp], 12992395 duplicates)
Reads: 80725489 total, 44278 skipped (flags/unmapped)
Fragments: 40446526 total (40205636 tlen-paired, 2398 hash-paired, 470 singletons, 7681 discordant, 230341 orphans, 9485 too large [>5000 bp], 13601374 duplicates)
Reads: 79762327 total, 46387 skipped (flags/unmapped)
Fragments: 39970107 total (39694630 tlen-paired, 3273 hash-paired, 339 singletons, 9858 discordant, 262007 orphans, 19036 too large [>5000 bp], 13855239 duplicates)
Reads: 88059149 total, 75454 skipped (flags/unmapped)
Fragments: 44199628 total (43549054 tlen-paired, 3123 hash-paired, 371 singletons, 127128 discordant, 519952 orphans, 52381 too large [>5000 bp], 15349552 duplicates)