Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_U0A-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_U0A-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_U0A-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_U0A-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77870068 total, 44009 skipped (flags/unmapped)
Fragments: 39016483 total (38761203 tlen-paired, 2985 hash-paired, 303 singletons, 11476 discordant, 240516 orphans, 16956 too large [>5000 bp], 13277734 duplicates)
Reads: 73014797 total, 50585 skipped (flags/unmapped)
Fragments: 36580003 total (36347352 tlen-paired, 3081 hash-paired, 381 singletons, 12734 discordant, 216455 orphans, 10521 too large [>5000 bp], 12438689 duplicates)
Reads: 79105460 total, 43623 skipped (flags/unmapped)
Fragments: 39633608 total (39398954 tlen-paired, 3017 hash-paired, 421 singletons, 8704 discordant, 222512 orphans, 8777 too large [>5000 bp], 13069531 duplicates)
Reads: 85872102 total, 74883 skipped (flags/unmapped)
Fragments: 43092847 total (42490478 tlen-paired, 2738 hash-paired, 343 singletons, 115934 discordant, 483354 orphans, 47611 too large [>5000 bp], 14713841 duplicates)