Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_GEO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GEO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GEO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GEO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77054843 total, 49092 skipped (flags/unmapped)
Fragments: 38590230 total (38390682 tlen-paired, 3216 hash-paired, 376 singletons, 6869 discordant, 189087 orphans, 7377 too large [>5000 bp], 13180552 duplicates)
Reads: 82273570 total, 41433 skipped (flags/unmapped)
Fragments: 41207081 total (41000106 tlen-paired, 3651 hash-paired, 384 singletons, 4659 discordant, 198281 orphans, 8320 too large [>5000 bp], 13675930 duplicates)
Reads: 90746090 total, 70451 skipped (flags/unmapped)
Fragments: 45535113 total (44918523 tlen-paired, 3229 hash-paired, 355 singletons, 119654 discordant, 493352 orphans, 49560 too large [>5000 bp], 15613032 duplicates)
Reads: 90080459 total, 47398 skipped (flags/unmapped)
Fragments: 45118625 total (44862313 tlen-paired, 5809 hash-paired, 322 singletons, 7586 discordant, 242595 orphans, 19364 too large [>5000 bp], 15415293 duplicates)