Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_NOY-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_NOY-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_NOY-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_NOY-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69248411 total, 47381 skipped (flags/unmapped)
Fragments: 34699261 total (34467079 tlen-paired, 2773 hash-paired, 356 singletons, 10575 discordant, 218478 orphans, 10671 too large [>5000 bp], 11532904 duplicates)
Reads: 73942849 total, 39540 skipped (flags/unmapped)
Fragments: 37058696 total (36819776 tlen-paired, 2465 hash-paired, 403 singletons, 7864 discordant, 228188 orphans, 7254 too large [>5000 bp], 11971919 duplicates)
Reads: 80427473 total, 43915 skipped (flags/unmapped)
Fragments: 40307010 total (40025345 tlen-paired, 2983 hash-paired, 277 singletons, 10946 discordant, 267459 orphans, 18637 too large [>5000 bp], 13431416 duplicates)
Reads: 81270369 total, 69359 skipped (flags/unmapped)
Fragments: 40814412 total (40153522 tlen-paired, 2653 hash-paired, 352 singletons, 126253 discordant, 531632 orphans, 52085 too large [>5000 bp], 13591981 duplicates)