Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_303-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_303-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_303-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_303-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 89261155 total, 58894 skipped (flags/unmapped)
Fragments: 44830256 total (44328847 tlen-paired, 3978 hash-paired, 452 singletons, 15956 discordant, 481023 orphans, 11612 too large [>5000 bp], 18021939 duplicates)
Reads: 94327433 total, 51730 skipped (flags/unmapped)
Fragments: 47380102 total (46860838 tlen-paired, 2411 hash-paired, 549 singletons, 11154 discordant, 505150 orphans, 10599 too large [>5000 bp], 18537517 duplicates)
Reads: 103951196 total, 58035 skipped (flags/unmapped)
Fragments: 52208584 total (51619958 tlen-paired, 6349 hash-paired, 415 singletons, 15998 discordant, 565864 orphans, 21136 too large [>5000 bp], 21032798 duplicates)
Reads: 106448280 total, 89144 skipped (flags/unmapped)
Fragments: 53703293 total (52069500 tlen-paired, 3600 hash-paired, 496 singletons, 323111 discordant, 1306586 orphans, 129816 too large [>5000 bp], 21542192 duplicates)