Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_08E-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_08E-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_08E-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_08E-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74952910 total, 51186 skipped (flags/unmapped)
Fragments: 37546614 total (37315484 tlen-paired, 3493 hash-paired, 422 singletons, 10501 discordant, 216714 orphans, 12816 too large [>5000 bp], 13212501 duplicates)
Reads: 79523163 total, 41093 skipped (flags/unmapped)
Fragments: 39844914 total (39610712 tlen-paired, 2936 hash-paired, 423 singletons, 7264 discordant, 223579 orphans, 8122 too large [>5000 bp], 13624617 duplicates)
Reads: 79546596 total, 43949 skipped (flags/unmapped)
Fragments: 39858899 total (39592943 tlen-paired, 3666 hash-paired, 304 singletons, 9175 discordant, 252811 orphans, 18982 too large [>5000 bp], 14002666 duplicates)
Reads: 87691483 total, 72104 skipped (flags/unmapped)
Fragments: 44014404 total (43368979 tlen-paired, 2553 hash-paired, 325 singletons, 126781 discordant, 515766 orphans, 53331 too large [>5000 bp], 15507946 duplicates)