Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_382-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_382-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_382-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_382-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 126949228 total, 83336 skipped (flags/unmapped)
Fragments: 63572644 total (63221253 tlen-paired, 4876 hash-paired, 508 singletons, 20617 discordant, 325390 orphans, 23251 too large [>5000 bp], 24543744 duplicates)
Reads: 134437638 total, 70097 skipped (flags/unmapped)
Fragments: 67334099 total (66985935 tlen-paired, 3957 hash-paired, 655 singletons, 14032 discordant, 329520 orphans, 14759 too large [>5000 bp], 25379679 duplicates)
Reads: 146827942 total, 75403 skipped (flags/unmapped)
Fragments: 73543110 total (73136073 tlen-paired, 8600 hash-paired, 503 singletons, 20448 discordant, 377486 orphans, 22154 too large [>5000 bp], 28558286 duplicates)
Reads: 147697269 total, 118637 skipped (flags/unmapped)
Fragments: 74076210 total (73194860 tlen-paired, 4691 hash-paired, 496 singletons, 163469 discordant, 712694 orphans, 69701 too large [>5000 bp], 28848723 duplicates)