Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_2RB-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_2RB-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2RB-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2RB-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80426204 total, 61607 skipped (flags/unmapped)
Fragments: 40395412 total (39926754 tlen-paired, 4290 hash-paired, 354 singletons, 15371 discordant, 448643 orphans, 11385 too large [>5000 bp], 14772689 duplicates)
Reads: 85078500 total, 50135 skipped (flags/unmapped)
Fragments: 42736586 total (42260157 tlen-paired, 2469 hash-paired, 465 singletons, 10655 discordant, 462840 orphans, 9249 too large [>5000 bp], 15214873 duplicates)
Reads: 93240406 total, 54131 skipped (flags/unmapped)
Fragments: 46839217 total (46274273 tlen-paired, 5532 hash-paired, 466 singletons, 16127 discordant, 542819 orphans, 25563 too large [>5000 bp], 17172988 duplicates)
Reads: 94525046 total, 84890 skipped (flags/unmapped)
Fragments: 47695908 total (46218213 tlen-paired, 3348 hash-paired, 461 singletons, 285905 discordant, 1187981 orphans, 118391 too large [>5000 bp], 17417270 duplicates)