Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3DG-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3DG-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3DG-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3DG-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64209909 total, 42295 skipped (flags/unmapped)
Fragments: 32185423 total (31944029 tlen-paired, 2621 hash-paired, 288 singletons, 13381 discordant, 225104 orphans, 11080 too large [>5000 bp], 10410199 duplicates)
Reads: 68109658 total, 37859 skipped (flags/unmapped)
Fragments: 34141100 total (33900992 tlen-paired, 2499 hash-paired, 380 singletons, 8748 discordant, 228481 orphans, 9230 too large [>5000 bp], 10735010 duplicates)
Reads: 75342011 total, 62201 skipped (flags/unmapped)
Fragments: 37846909 total (37212776 tlen-paired, 2184 hash-paired, 293 singletons, 119711 discordant, 511945 orphans, 49115 too large [>5000 bp], 12253491 duplicates)
Reads: 74533582 total, 38443 skipped (flags/unmapped)
Fragments: 37365095 total (37091927 tlen-paired, 1957 hash-paired, 277 singletons, 12940 discordant, 257994 orphans, 11610 too large [>5000 bp], 12071649 duplicates)