Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BTBG-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BTBG-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BTBG-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BTBG-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83918097 total, 60823 skipped (flags/unmapped)
Fragments: 42219184 total (41597517 tlen-paired, 2643 hash-paired, 525 singletons, 13916 discordant, 604583 orphans, 12007 too large [>5000 bp], 16928403 duplicates)
Reads: 90373127 total, 53904 skipped (flags/unmapped)
Fragments: 45475490 total (44809819 tlen-paired, 2437 hash-paired, 566 singletons, 10297 discordant, 652371 orphans, 10590 too large [>5000 bp], 17725808 duplicates)
Reads: 100309956 total, 98137 skipped (flags/unmapped)
Fragments: 50804713 total (48618402 tlen-paired, 4461 hash-paired, 434 singletons, 432185 discordant, 1749231 orphans, 176029 too large [>5000 bp], 20246002 duplicates)
Reads: 98449055 total, 59871 skipped (flags/unmapped)
Fragments: 49535927 total (48771422 tlen-paired, 5738 hash-paired, 372 singletons, 15301 discordant, 743094 orphans, 30398 too large [>5000 bp], 19884073 duplicates)