Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_27L-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_27L-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_27L-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_27L-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 94661139 total, 47561 skipped (flags/unmapped)
Fragments: 47414779 total (47168935 tlen-paired, 3172 hash-paired, 519 singletons, 8248 discordant, 233905 orphans, 9222 too large [>5000 bp], 16484433 duplicates)
Reads: 89886772 total, 60921 skipped (flags/unmapped)
Fragments: 45013897 total (44770784 tlen-paired, 4319 hash-paired, 502 singletons, 11635 discordant, 226657 orphans, 12608 too large [>5000 bp], 16017639 duplicates)
Reads: 104394515 total, 53086 skipped (flags/unmapped)
Fragments: 52290228 total (52004481 tlen-paired, 4387 hash-paired, 367 singletons, 11977 discordant, 269016 orphans, 15178 too large [>5000 bp], 18668523 duplicates)
Reads: 104975986 total, 86562 skipped (flags/unmapped)
Fragments: 52661862 total (51991414 tlen-paired, 3528 hash-paired, 414 singletons, 127426 discordant, 539080 orphans, 52597 too large [>5000 bp], 18836240 duplicates)