Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BMKP-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_BMKP-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_BMKP-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BMKP-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67002905 total, 51963 skipped (flags/unmapped)
Fragments: 33665018 total (33255832 tlen-paired, 2554 hash-paired, 461 singletons, 10692 discordant, 395479 orphans, 8423 too large [>5000 bp], 12207845 duplicates)
Reads: 70583535 total, 43023 skipped (flags/unmapped)
Fragments: 35471665 total (35045039 tlen-paired, 1737 hash-paired, 481 singletons, 7133 discordant, 417275 orphans, 7469 too large [>5000 bp], 12582274 duplicates)
Reads: 77111784 total, 47295 skipped (flags/unmapped)
Fragments: 38750649 total (38255224 tlen-paired, 3102 hash-paired, 367 singletons, 10604 discordant, 481352 orphans, 22455 too large [>5000 bp], 14101648 duplicates)
Reads: 78746967 total, 85301 skipped (flags/unmapped)
Fragments: 39775568 total (38388857 tlen-paired, 1466 hash-paired, 456 singletons, 274751 discordant, 1110038 orphans, 110512 too large [>5000 bp], 14399962 duplicates)