Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2OO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2OO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2OO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2OO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77336756 total, 44798 skipped (flags/unmapped)
Fragments: 38844983 total (38419441 tlen-paired, 2177 hash-paired, 446 singletons, 8857 discordant, 414062 orphans, 8250 too large [>5000 bp], 13845333 duplicates)
Reads: 72381171 total, 55551 skipped (flags/unmapped)
Fragments: 36350969 total (35935010 tlen-paired, 3560 hash-paired, 456 singletons, 13511 discordant, 398432 orphans, 11285 too large [>5000 bp], 13371049 duplicates)
Reads: 84002139 total, 49594 skipped (flags/unmapped)
Fragments: 42196117 total (41701823 tlen-paired, 4868 hash-paired, 366 singletons, 13773 discordant, 475287 orphans, 17982 too large [>5000 bp], 15512916 duplicates)
Reads: 85699003 total, 85789 skipped (flags/unmapped)
Fragments: 43228912 total (41894891 tlen-paired, 1630 hash-paired, 463 singletons, 262077 discordant, 1069851 orphans, 112852 too large [>5000 bp], 15851754 duplicates)