Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_30B-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_30B-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_30B-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_30B-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75518844 total, 54804 skipped (flags/unmapped)
Fragments: 37955477 total (37465653 tlen-paired, 3092 hash-paired, 445 singletons, 16892 discordant, 469395 orphans, 11463 too large [>5000 bp], 14181827 duplicates)
Reads: 79950762 total, 50564 skipped (flags/unmapped)
Fragments: 40182497 total (39681334 tlen-paired, 2658 hash-paired, 428 singletons, 12035 discordant, 486042 orphans, 10837 too large [>5000 bp], 14654712 duplicates)
Reads: 87678076 total, 51546 skipped (flags/unmapped)
Fragments: 44068846 total (43491090 tlen-paired, 2546 hash-paired, 342 singletons, 17230 discordant, 557638 orphans, 23409 too large [>5000 bp], 16482059 duplicates)
Reads: 89348065 total, 82995 skipped (flags/unmapped)
Fragments: 45129199 total (43586598 tlen-paired, 2273 hash-paired, 490 singletons, 301414 discordant, 1238424 orphans, 122793 too large [>5000 bp], 16815330 duplicates)