Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_EBU-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_EBU-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EBU-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EBU-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72562180 total, 53885 skipped (flags/unmapped)
Fragments: 36398837 total (36075301 tlen-paired, 3805 hash-paired, 406 singletons, 10936 discordant, 308389 orphans, 9708 too large [>5000 bp], 12717984 duplicates)
Reads: 78204722 total, 44661 skipped (flags/unmapped)
Fragments: 39238508 total (38897199 tlen-paired, 2097 hash-paired, 521 singletons, 8123 discordant, 330568 orphans, 7067 too large [>5000 bp], 13292457 duplicates)
Reads: 77438943 total, 46285 skipped (flags/unmapped)
Fragments: 38854600 total (38486015 tlen-paired, 3410 hash-paired, 346 singletons, 9721 discordant, 355108 orphans, 19456 too large [>5000 bp], 13548373 duplicates)
Reads: 85868428 total, 82840 skipped (flags/unmapped)
Fragments: 43211916 total (42194852 tlen-paired, 2597 hash-paired, 399 singletons, 203905 discordant, 810163 orphans, 86159 too large [>5000 bp], 15044957 duplicates)