Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_12C-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_12C-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_12C-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_12C-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 49710278 total, 36478 skipped (flags/unmapped)
Fragments: 24913274 total (24732773 tlen-paired, 2668 hash-paired, 277 singletons, 10067 discordant, 167489 orphans, 7509 too large [>5000 bp], 7358549 duplicates)
Reads: 52981940 total, 31702 skipped (flags/unmapped)
Fragments: 26559414 total (26353386 tlen-paired, 3931 hash-paired, 238 singletons, 8647 discordant, 193212 orphans, 12430 too large [>5000 bp], 7872407 duplicates)
Reads: 54049351 total, 29698 skipped (flags/unmapped)
Fragments: 27089346 total (26907514 tlen-paired, 2024 hash-paired, 300 singletons, 7293 discordant, 172215 orphans, 6738 too large [>5000 bp], 7808056 duplicates)
Reads: 58330688 total, 54317 skipped (flags/unmapped)
Fragments: 29287583 total (28820763 tlen-paired, 2488 hash-paired, 248 singletons, 88841 discordant, 375243 orphans, 38348 too large [>5000 bp], 8677271 duplicates)