Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_74O-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_74O-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_74O-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_74O-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81743940 total, 58304 skipped (flags/unmapped)
Fragments: 40966468 total (40672674 tlen-paired, 3734 hash-paired, 357 singletons, 15396 discordant, 274307 orphans, 13682 too large [>5000 bp], 14747483 duplicates)
Reads: 85664232 total, 45687 skipped (flags/unmapped)
Fragments: 42938257 total (42647053 tlen-paired, 2638 hash-paired, 454 singletons, 10007 discordant, 278105 orphans, 10295 too large [>5000 bp], 15114345 duplicates)
Reads: 95050108 total, 78304 skipped (flags/unmapped)
Fragments: 47741829 total (46951403 tlen-paired, 2343 hash-paired, 366 singletons, 149699 discordant, 638018 orphans, 63265 too large [>5000 bp], 17257132 duplicates)
Reads: 94237356 total, 51775 skipped (flags/unmapped)
Fragments: 47241131 total (46890512 tlen-paired, 5321 hash-paired, 331 singletons, 14923 discordant, 330044 orphans, 16847 too large [>5000 bp], 17053807 duplicates)