Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_20Z-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_20Z-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_20Z-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_20Z-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64327782 total, 40084 skipped (flags/unmapped)
Fragments: 32213218 total (32049865 tlen-paired, 3008 hash-paired, 269 singletons, 9627 discordant, 150449 orphans, 5990 too large [>5000 bp], 10464195 duplicates)
Reads: 70470901 total, 33253 skipped (flags/unmapped)
Fragments: 35292841 total (35122208 tlen-paired, 3015 hash-paired, 338 singletons, 6800 discordant, 160480 orphans, 6392 too large [>5000 bp], 11275128 duplicates)
Reads: 68650655 total, 36608 skipped (flags/unmapped)
Fragments: 34382173 total (34194227 tlen-paired, 4189 hash-paired, 257 singletons, 7952 discordant, 175548 orphans, 12753 too large [>5000 bp], 11187982 duplicates)
Reads: 75524638 total, 60796 skipped (flags/unmapped)
Fragments: 37866611 total (37450184 tlen-paired, 2519 hash-paired, 282 singletons, 79666 discordant, 333960 orphans, 32431 too large [>5000 bp], 12365596 duplicates)