Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1NE-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1NE-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1NE-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1NE-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 108750249 total, 73706 skipped (flags/unmapped)
Fragments: 54506010 total (54118703 tlen-paired, 3611 hash-paired, 443 singletons, 19227 discordant, 364026 orphans, 14496 too large [>5000 bp], 20153557 duplicates)
Reads: 115563597 total, 62687 skipped (flags/unmapped)
Fragments: 57925408 total (57531604 tlen-paired, 3044 hash-paired, 648 singletons, 12678 discordant, 377434 orphans, 14088 too large [>5000 bp], 21035341 duplicates)
Reads: 125022694 total, 70714 skipped (flags/unmapped)
Fragments: 62669525 total (62203319 tlen-paired, 4020 hash-paired, 490 singletons, 19306 discordant, 442390 orphans, 27905 too large [>5000 bp], 23287472 duplicates)
Reads: 127207273 total, 114612 skipped (flags/unmapped)
Fragments: 63894826 total (62824854 tlen-paired, 2765 hash-paired, 594 singletons, 203176 discordant, 863437 orphans, 83520 too large [>5000 bp], 23743736 duplicates)