Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1OL-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1OL-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1OL-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1OL-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 108017372 total, 73641 skipped (flags/unmapped)
Fragments: 54142994 total (53741903 tlen-paired, 4629 hash-paired, 571 singletons, 23107 discordant, 372784 orphans, 15549 too large [>5000 bp], 20792080 duplicates)
Reads: 115156802 total, 60583 skipped (flags/unmapped)
Fragments: 57724438 total (57326681 tlen-paired, 3581 hash-paired, 611 singletons, 15961 discordant, 377604 orphans, 12779 too large [>5000 bp], 21597957 duplicates)
Reads: 125606415 total, 67499 skipped (flags/unmapped)
Fragments: 62965051 total (62477361 tlen-paired, 6671 hash-paired, 436 singletons, 23321 discordant, 457262 orphans, 33256 too large [>5000 bp], 24215701 duplicates)
Reads: 126908544 total, 105052 skipped (flags/unmapped)
Fragments: 63740650 total (62713240 tlen-paired, 3473 hash-paired, 485 singletons, 191275 discordant, 832177 orphans, 77427 too large [>5000 bp], 24566198 duplicates)