Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2UX-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2UX-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2UX-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2UX-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72642178 total, 40990 skipped (flags/unmapped)
Fragments: 36515043 total (36058112 tlen-paired, 2232 hash-paired, 418 singletons, 8407 discordant, 445874 orphans, 8697 too large [>5000 bp], 12746337 duplicates)
Reads: 68078676 total, 51465 skipped (flags/unmapped)
Fragments: 34215477 total (33775831 tlen-paired, 4521 hash-paired, 326 singletons, 11910 discordant, 422889 orphans, 9736 too large [>5000 bp], 12229787 duplicates)
Reads: 79401535 total, 45029 skipped (flags/unmapped)
Fragments: 39913587 total (39393862 tlen-paired, 4089 hash-paired, 361 singletons, 12426 discordant, 502849 orphans, 16271 too large [>5000 bp], 14300465 duplicates)
Reads: 80719788 total, 81258 skipped (flags/unmapped)
Fragments: 40790491 total (39315221 tlen-paired, 1840 hash-paired, 367 singletons, 291642 discordant, 1181421 orphans, 119668 too large [>5000 bp], 14515480 duplicates)