Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2J1-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2J1-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2J1-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2J1-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70577499 total, 46812 skipped (flags/unmapped)
Fragments: 35465171 total (35034821 tlen-paired, 2898 hash-paired, 378 singletons, 11583 discordant, 415491 orphans, 8107 too large [>5000 bp], 13108398 duplicates)
Reads: 75604508 total, 41925 skipped (flags/unmapped)
Fragments: 37994831 total (37541506 tlen-paired, 2171 hash-paired, 526 singletons, 8111 discordant, 442517 orphans, 7982 too large [>5000 bp], 13693557 duplicates)
Reads: 82879002 total, 44781 skipped (flags/unmapped)
Fragments: 41652534 total (41142597 tlen-paired, 2188 hash-paired, 350 singletons, 12246 discordant, 495153 orphans, 12328 too large [>5000 bp], 15427215 duplicates)
Reads: 84212247 total, 73111 skipped (flags/unmapped)
Fragments: 42538731 total (41075875 tlen-paired, 3294 hash-paired, 401 singletons, 289588 discordant, 1169573 orphans, 115824 too large [>5000 bp], 15679359 duplicates)