Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BDV5-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BDV5-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BDV5-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BDV5-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79114348 total, 58303 skipped (flags/unmapped)
Fragments: 39716708 total (39288912 tlen-paired, 4002 hash-paired, 393 singletons, 14199 discordant, 409202 orphans, 16112 too large [>5000 bp], 14637959 duplicates)
Reads: 84028568 total, 48041 skipped (flags/unmapped)
Fragments: 42191738 total (41754267 tlen-paired, 3056 hash-paired, 452 singletons, 10458 discordant, 423505 orphans, 10504 too large [>5000 bp], 15214535 duplicates)
Reads: 92255097 total, 49967 skipped (flags/unmapped)
Fragments: 46329536 total (45821161 tlen-paired, 4532 hash-paired, 379 singletons, 14871 discordant, 488593 orphans, 17515 too large [>5000 bp], 17094842 duplicates)
Reads: 93946855 total, 78486 skipped (flags/unmapped)
Fragments: 47369173 total (46013791 tlen-paired, 2474 hash-paired, 447 singletons, 265743 discordant, 1086718 orphans, 108594 too large [>5000 bp], 17461059 duplicates)