Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2RJ-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2RJ-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2RJ-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2RJ-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70546904 total, 52541 skipped (flags/unmapped)
Fragments: 35448259 total (35009324 tlen-paired, 2647 hash-paired, 392 singletons, 12995 discordant, 422901 orphans, 10569 too large [>5000 bp], 13580103 duplicates)
Reads: 74697030 total, 45946 skipped (flags/unmapped)
Fragments: 37540649 total (37078795 tlen-paired, 2616 hash-paired, 486 singletons, 8976 discordant, 449776 orphans, 10024 too large [>5000 bp], 13986303 duplicates)
Reads: 81637679 total, 49152 skipped (flags/unmapped)
Fragments: 41030297 total (40493526 tlen-paired, 5371 hash-paired, 389 singletons, 13137 discordant, 517874 orphans, 23098 too large [>5000 bp], 15699914 duplicates)
Reads: 83421519 total, 83894 skipped (flags/unmapped)
Fragments: 42137362 total (40673280 tlen-paired, 3076 hash-paired, 448 singletons, 289099 discordant, 1171459 orphans, 117404 too large [>5000 bp], 16041836 duplicates)