Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_O1-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_O1-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_O1-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_O1-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86613423 total, 53555 skipped (flags/unmapped)
Fragments: 43396893 total (43128197 tlen-paired, 4268 hash-paired, 383 singletons, 12790 discordant, 251255 orphans, 8860 too large [>5000 bp], 15211115 duplicates)
Reads: 92788282 total, 47780 skipped (flags/unmapped)
Fragments: 46492040 total (46217778 tlen-paired, 2379 hash-paired, 449 singletons, 9183 discordant, 262251 orphans, 9561 too large [>5000 bp], 15824652 duplicates)
Reads: 92266186 total, 51998 skipped (flags/unmapped)
Fragments: 46234271 total (45933639 tlen-paired, 3466 hash-paired, 364 singletons, 11628 discordant, 285174 orphans, 15592 too large [>5000 bp], 16208452 duplicates)
Reads: 102172027 total, 84968 skipped (flags/unmapped)
Fragments: 51280372 total (50538978 tlen-paired, 2270 hash-paired, 390 singletons, 145071 discordant, 593663 orphans, 60184 too large [>5000 bp], 18028481 duplicates)