Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_02I-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_02I-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_02I-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_02I-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64452826 total, 42569 skipped (flags/unmapped)
Fragments: 32294025 total (32084877 tlen-paired, 3494 hash-paired, 327 singletons, 11499 discordant, 193828 orphans, 8181 too large [>5000 bp], 10203295 duplicates)
Reads: 69493163 total, 38092 skipped (flags/unmapped)
Fragments: 34818836 total (34606417 tlen-paired, 3197 hash-paired, 390 singletons, 8423 discordant, 200409 orphans, 9099 too large [>5000 bp], 10678784 duplicates)
Reads: 75709755 total, 58197 skipped (flags/unmapped)
Fragments: 38001553 total (37456981 tlen-paired, 2770 hash-paired, 304 singletons, 105668 discordant, 435830 orphans, 42293 too large [>5000 bp], 12078194 duplicates)
Reads: 68475878 total, 37651 skipped (flags/unmapped)
Fragments: 34315506 total (34079223 tlen-paired, 2978 hash-paired, 249 singletons, 10008 discordant, 223048 orphans, 15256 too large [>5000 bp], 10856893 duplicates)