Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2PC-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2PC-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2PC-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2PC-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78489317 total, 55950 skipped (flags/unmapped)
Fragments: 39345092 total (39048473 tlen-paired, 2605 hash-paired, 471 singletons, 14113 discordant, 279430 orphans, 11542 too large [>5000 bp], 14882810 duplicates)
Reads: 83624859 total, 45701 skipped (flags/unmapped)
Fragments: 41923995 total (41621851 tlen-paired, 2079 hash-paired, 459 singletons, 9551 discordant, 290055 orphans, 10841 too large [>5000 bp], 15382389 duplicates)
Reads: 91348231 total, 50931 skipped (flags/unmapped)
Fragments: 45797233 total (45442255 tlen-paired, 2638 hash-paired, 382 singletons, 14588 discordant, 337370 orphans, 20293 too large [>5000 bp], 17288678 duplicates)
Reads: 91841473 total, 83099 skipped (flags/unmapped)
Fragments: 46149480 total (45310711 tlen-paired, 2555 hash-paired, 377 singletons, 160252 discordant, 675585 orphans, 67688 too large [>5000 bp], 17465245 duplicates)