Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BAHZ-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_BAHZ-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_BAHZ-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BAHZ-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72857093 total, 56656 skipped (flags/unmapped)
Fragments: 36544601 total (36220255 tlen-paired, 4280 hash-paired, 363 singletons, 6795 discordant, 312908 orphans, 12253 too large [>5000 bp], 13672084 duplicates)
Reads: 81223939 total, 48718 skipped (flags/unmapped)
Fragments: 40765326 total (40382612 tlen-paired, 2908 hash-paired, 481 singletons, 5581 discordant, 373744 orphans, 9397 too large [>5000 bp], 14924228 duplicates)
Reads: 86185899 total, 48748 skipped (flags/unmapped)
Fragments: 43253114 total (42826299 tlen-paired, 5347 hash-paired, 342 singletons, 7025 discordant, 414101 orphans, 22683 too large [>5000 bp], 16109687 duplicates)
Reads: 87059026 total, 84214 skipped (flags/unmapped)
Fragments: 43870028 total (42679363 tlen-paired, 2997 hash-paired, 426 singletons, 239862 discordant, 947380 orphans, 91281 too large [>5000 bp], 16219040 duplicates)