Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_3OA-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3OA-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3OA-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3OA-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83202153 total, 61085 skipped (flags/unmapped)
Fragments: 41778026 total (41320190 tlen-paired, 3788 hash-paired, 436 singletons, 11724 discordant, 441888 orphans, 13670 too large [>5000 bp], 15665708 duplicates)
Reads: 90145625 total, 48769 skipped (flags/unmapped)
Fragments: 45272907 total (44794101 tlen-paired, 2539 hash-paired, 487 singletons, 8849 discordant, 466931 orphans, 9230 too large [>5000 bp], 16426562 duplicates)
Reads: 97296042 total, 53235 skipped (flags/unmapped)
Fragments: 48869848 total (48318713 tlen-paired, 4124 hash-paired, 351 singletons, 12508 discordant, 534152 orphans, 18807 too large [>5000 bp], 18320645 duplicates)
Reads: 99218278 total, 85475 skipped (flags/unmapped)
Fragments: 50059919 total (48508295 tlen-paired, 3570 hash-paired, 455 singletons, 307053 discordant, 1240546 orphans, 126983 too large [>5000 bp], 18730616 duplicates)