Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_MKP-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai[W::hts_idx_load3] 
The index file is older than the data file: 1029_MKP-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_MKP-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_MKP-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66165372 total, 46157 skipped (flags/unmapped)
Fragments: 33157277 total (32931863 tlen-paired, 3065 hash-paired, 292 singletons, 10122 discordant, 211935 orphans, 8444 too large [>5000 bp], 10584127 duplicates)
Reads: 70666290 total, 37669 skipped (flags/unmapped)
Fragments: 35416449 total (35190047 tlen-paired, 2033 hash-paired, 348 singletons, 6900 discordant, 217121 orphans, 6596 too large [>5000 bp], 11023159 duplicates)
Reads: 77537772 total, 68779 skipped (flags/unmapped)
Fragments: 38941322 total (38301187 tlen-paired, 2851 hash-paired, 296 singletons, 121799 discordant, 515189 orphans, 50917 too large [>5000 bp], 12506782 duplicates)
Reads: 76867896 total, 42701 skipped (flags/unmapped)
Fragments: 38528820 total (38247594 tlen-paired, 3947 hash-paired, 331 singletons, 10954 discordant, 265994 orphans, 16940 too large [>5000 bp], 12352482 duplicates)