Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1173_LV7-N1-BDNA-01_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_LV7-N1-BDNA-01_A23KFG7LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1173_LV7-N1-BDNA-01_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_LV7-N1-BDNA-01_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78394561 total, 56011 skipped (flags/unmapped)
Fragments: 39284460 total (39008136 tlen-paired, 4060 hash-paired, 447 singletons, 17930 discordant, 253887 orphans, 11982 too large [>5000 bp], 13466130 duplicates)
Reads: 85164935 total, 48566 skipped (flags/unmapped)
Fragments: 42675977 total (42402080 tlen-paired, 3632 hash-paired, 425 singletons, 12500 discordant, 257340 orphans, 11090 too large [>5000 bp], 14302264 duplicates)
Reads: 83222591 total, 51520 skipped (flags/unmapped)
Fragments: 41710189 total (41404679 tlen-paired, 5895 hash-paired, 302 singletons, 15152 discordant, 284161 orphans, 17578 too large [>5000 bp], 14383676 duplicates)
Reads: 91772847 total, 81635 skipped (flags/unmapped)
Fragments: 46057777 total (45407869 tlen-paired, 3367 hash-paired, 365 singletons, 122061 discordant, 524115 orphans, 50069 too large [>5000 bp], 15968140 duplicates)