Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_N4U-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_N4U-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_N4U-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_N4U-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66504470 total, 45371 skipped (flags/unmapped)
Fragments: 33313414 total (33115819 tlen-paired, 3366 hash-paired, 352 singletons, 9230 discordant, 184647 orphans, 8635 too large [>5000 bp], 10818653 duplicates)
Reads: 77513324 total, 41390 skipped (flags/unmapped)
Fragments: 38833025 total (38599701 tlen-paired, 3499 hash-paired, 314 singletons, 9025 discordant, 220486 orphans, 13342 too large [>5000 bp], 12635400 duplicates)
Reads: 71116444 total, 36351 skipped (flags/unmapped)
Fragments: 35629520 total (35427726 tlen-paired, 2280 hash-paired, 430 singletons, 6401 discordant, 192683 orphans, 7083 too large [>5000 bp], 11290230 duplicates)
Reads: 78226629 total, 68412 skipped (flags/unmapped)
Fragments: 39259029 total (38698026 tlen-paired, 2839 hash-paired, 325 singletons, 107425 discordant, 450414 orphans, 45449 too large [>5000 bp], 12795363 duplicates)