Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_HLV-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HLV-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_HLV-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_HLV-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75074290 total, 46594 skipped (flags/unmapped)
Fragments: 37604137 total (37394886 tlen-paired, 2604 hash-paired, 406 singletons, 9517 discordant, 196724 orphans, 8276 too large [>5000 bp], 12931068 duplicates)
Reads: 80068987 total, 40505 skipped (flags/unmapped)
Fragments: 40108396 total (39895272 tlen-paired, 2463 hash-paired, 381 singletons, 6583 discordant, 203697 orphans, 7884 too large [>5000 bp], 13442658 duplicates)
Reads: 87224798 total, 43768 skipped (flags/unmapped)
Fragments: 43695142 total (43439914 tlen-paired, 4446 hash-paired, 285 singletons, 9900 discordant, 240597 orphans, 15814 too large [>5000 bp], 15079227 duplicates)
Reads: 87932447 total, 73982 skipped (flags/unmapped)
Fragments: 44120778 total (43531083 tlen-paired, 2370 hash-paired, 332 singletons, 112598 discordant, 474395 orphans, 45818 too large [>5000 bp], 15254780 duplicates)