Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_4EU-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_4EU-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_4EU-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_4EU-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72563479 total, 53085 skipped (flags/unmapped)
Fragments: 36430690 total (36040610 tlen-paired, 4289 hash-paired, 391 singletons, 14447 discordant, 370953 orphans, 10179 too large [>5000 bp], 12588753 duplicates)
Reads: 77482904 total, 46646 skipped (flags/unmapped)
Fragments: 38902909 total (38491492 tlen-paired, 4468 hash-paired, 350 singletons, 11959 discordant, 394640 orphans, 12715 too large [>5000 bp], 13489429 duplicates)
Reads: 77922243 total, 46691 skipped (flags/unmapped)
Fragments: 39118862 total (38723489 tlen-paired, 3209 hash-paired, 469 singletons, 9736 discordant, 381959 orphans, 10128 too large [>5000 bp], 13153587 duplicates)
Reads: 85835736 total, 72579 skipped (flags/unmapped)
Fragments: 43255481 total (42073578 tlen-paired, 1829 hash-paired, 399 singletons, 235483 discordant, 944192 orphans, 98393 too large [>5000 bp], 14997352 duplicates)