Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BMYS-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BMYS-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BMYS-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BMYS-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73292530 total, 54365 skipped (flags/unmapped)
Fragments: 36861856 total (36339021 tlen-paired, 2553 hash-paired, 367 singletons, 12717 discordant, 507198 orphans, 11009 too large [>5000 bp], 13482978 duplicates)
Reads: 78023992 total, 48191 skipped (flags/unmapped)
Fragments: 39252796 total (38666237 tlen-paired, 6767 hash-paired, 347 singletons, 11475 discordant, 567970 orphans, 19263 too large [>5000 bp], 14380718 duplicates)
Reads: 78733249 total, 46704 skipped (flags/unmapped)
Fragments: 39605826 total (39050460 tlen-paired, 2270 hash-paired, 524 singletons, 9205 discordant, 543367 orphans, 9392 too large [>5000 bp], 14093998 duplicates)
Reads: 87695987 total, 82130 skipped (flags/unmapped)
Fragments: 44367531 total (42585212 tlen-paired, 3078 hash-paired, 462 singletons, 364376 discordant, 1414403 orphans, 146830 too large [>5000 bp], 16158661 duplicates)