Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_019-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_019-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_019-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_019-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77562347 total, 43016 skipped (flags/unmapped)
Fragments: 38865773 total (38626683 tlen-paired, 2952 hash-paired, 445 singletons, 6491 discordant, 229202 orphans, 8716 too large [>5000 bp], 13227837 duplicates)
Reads: 73250143 total, 51010 skipped (flags/unmapped)
Fragments: 36699330 total (36469157 tlen-paired, 2404 hash-paired, 334 singletons, 9536 discordant, 217899 orphans, 9353 too large [>5000 bp], 12807189 duplicates)
Reads: 85249999 total, 46586 skipped (flags/unmapped)
Fragments: 42723065 total (42433941 tlen-paired, 4267 hash-paired, 351 singletons, 10452 discordant, 274054 orphans, 15844 too large [>5000 bp], 14937411 duplicates)
Reads: 85812608 total, 78964 skipped (flags/unmapped)
Fragments: 43087033 total (42401156 tlen-paired, 3407 hash-paired, 376 singletons, 132056 discordant, 550038 orphans, 54996 too large [>5000 bp], 15083882 duplicates)