Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_LGO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_LGO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1029_LGO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_LGO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88576846 total, 46999 skipped (flags/unmapped)
Fragments: 44381040 total (44122159 tlen-paired, 2774 hash-paired, 481 singletons, 5504 discordant, 250122 orphans, 9185 too large [>5000 bp], 15926729 duplicates)
Reads: 83590454 total, 59562 skipped (flags/unmapped)
Fragments: 41871977 total (41623846 tlen-paired, 4493 hash-paired, 381 singletons, 7814 discordant, 235443 orphans, 11381 too large [>5000 bp], 15464591 duplicates)
Reads: 98302912 total, 83318 skipped (flags/unmapped)
Fragments: 49362568 total (48571612 tlen-paired, 2456 hash-paired, 360 singletons, 154090 discordant, 634050 orphans, 64434 too large [>5000 bp], 18277133 duplicates)
Reads: 97304718 total, 49924 skipped (flags/unmapped)
Fragments: 48757152 total (48446131 tlen-paired, 2955 hash-paired, 340 singletons, 7838 discordant, 299888 orphans, 20359 too large [>5000 bp], 18009313 duplicates)