Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_18S-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_18S-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_18S-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_18S-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64460811 total, 45266 skipped (flags/unmapped)
Fragments: 32309949 total (32071695 tlen-paired, 2689 hash-paired, 302 singletons, 11092 discordant, 224171 orphans, 10060 too large [>5000 bp], 10670203 duplicates)
Reads: 69338251 total, 36741 skipped (flags/unmapped)
Fragments: 34761417 total (34516047 tlen-paired, 2155 hash-paired, 361 singletons, 7669 discordant, 235185 orphans, 7111 too large [>5000 bp], 11197994 duplicates)
Reads: 75496653 total, 40521 skipped (flags/unmapped)
Fragments: 37850302 total (37556422 tlen-paired, 3256 hash-paired, 249 singletons, 11654 discordant, 278721 orphans, 17249 too large [>5000 bp], 12512407 duplicates)
Reads: 76196096 total, 66803 skipped (flags/unmapped)
Fragments: 38286352 total (37604425 tlen-paired, 2851 hash-paired, 283 singletons, 130715 discordant, 548078 orphans, 52475 too large [>5000 bp], 12667633 duplicates)