Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2VD-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2VD-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1136_2VD-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_2VD-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79196474 total, 54193 skipped (flags/unmapped)
Fragments: 39689634 total (39416997 tlen-paired, 3356 hash-paired, 418 singletons, 13830 discordant, 255033 orphans, 9232 too large [>5000 bp], 14224598 duplicates)
Reads: 84421630 total, 46282 skipped (flags/unmapped)
Fragments: 42311325 total (42032444 tlen-paired, 2302 hash-paired, 454 singletons, 9807 discordant, 266318 orphans, 9735 too large [>5000 bp], 14681895 duplicates)
Reads: 84026735 total, 49735 skipped (flags/unmapped)
Fragments: 42114616 total (41802538 tlen-paired, 3216 hash-paired, 318 singletons, 11990 discordant, 296554 orphans, 22320 too large [>5000 bp], 15102892 duplicates)
Reads: 92704162 total, 80464 skipped (flags/unmapped)
Fragments: 46551686 total (45804321 tlen-paired, 3175 hash-paired, 425 singletons, 146346 discordant, 597419 orphans, 59085 too large [>5000 bp], 16761389 duplicates)