Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BJNN-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BJNN-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BJNN-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BJNN-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87269497 total, 61612 skipped (flags/unmapped)
Fragments: 43820716 total (43344923 tlen-paired, 3717 hash-paired, 468 singletons, 15543 discordant, 456065 orphans, 11493 too large [>5000 bp], 16179637 duplicates)
Reads: 94517660 total, 53844 skipped (flags/unmapped)
Fragments: 47463156 total (46966192 tlen-paired, 2408 hash-paired, 623 singletons, 11330 discordant, 482603 orphans, 10365 too large [>5000 bp], 17022258 duplicates)
Reads: 93137018 total, 55900 skipped (flags/unmapped)
Fragments: 46773512 total (46251031 tlen-paired, 3151 hash-paired, 432 singletons, 13616 discordant, 505282 orphans, 19904 too large [>5000 bp], 17271180 duplicates)
Reads: 103889560 total, 95311 skipped (flags/unmapped)
Fragments: 52372062 total (50867224 tlen-paired, 4024 hash-paired, 515 singletons, 302229 discordant, 1198070 orphans, 124355 too large [>5000 bp], 19280518 duplicates)