Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_32G-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_32G-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_32G-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_32G-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75005757 total, 53882 skipped (flags/unmapped)
Fragments: 37689134 total (37224036 tlen-paired, 3268 hash-paired, 400 singletons, 15889 discordant, 445541 orphans, 9774 too large [>5000 bp], 13563484 duplicates)
Reads: 79802936 total, 47920 skipped (flags/unmapped)
Fragments: 40096240 total (39620785 tlen-paired, 2947 hash-paired, 474 singletons, 10912 discordant, 461122 orphans, 12066 too large [>5000 bp], 14077767 duplicates)
Reads: 87211670 total, 53425 skipped (flags/unmapped)
Fragments: 43825089 total (43277175 tlen-paired, 4768 hash-paired, 368 singletons, 16413 discordant, 526365 orphans, 17400 too large [>5000 bp], 15820114 duplicates)
Reads: 89228179 total, 83113 skipped (flags/unmapped)
Fragments: 45042753 total (43571200 tlen-paired, 3710 hash-paired, 415 singletons, 288501 discordant, 1178927 orphans, 119451 too large [>5000 bp], 16175569 duplicates)