Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_1N2-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_1N2-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1N2-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1N2-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 106720537 total, 69338 skipped (flags/unmapped)
Fragments: 53474495 total (53117845 tlen-paired, 5086 hash-paired, 523 singletons, 22847 discordant, 328194 orphans, 15463 too large [>5000 bp], 19073021 duplicates)
Reads: 112930225 total, 62260 skipped (flags/unmapped)
Fragments: 56593134 total (56204425 tlen-paired, 8804 hash-paired, 437 singletons, 19648 discordant, 359820 orphans, 20977 too large [>5000 bp], 20298931 duplicates)
Reads: 114805189 total, 60813 skipped (flags/unmapped)
Fragments: 57522594 total (57171203 tlen-paired, 5944 hash-paired, 568 singletons, 16305 discordant, 328574 orphans, 14165 too large [>5000 bp], 20104455 duplicates)
Reads: 124003688 total, 103973 skipped (flags/unmapped)
Fragments: 62222334 total (61389824 tlen-paired, 4842 hash-paired, 497 singletons, 154735 discordant, 672436 orphans, 63990 too large [>5000 bp], 22419520 duplicates)