Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1HP-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1HP-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1HP-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1HP-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 111549670 total, 72487 skipped (flags/unmapped)
Fragments: 55918454 total (55502423 tlen-paired, 3749 hash-paired, 554 singletons, 24869 discordant, 386859 orphans, 13844 too large [>5000 bp], 20356960 duplicates)
Reads: 118453931 total, 65650 skipped (flags/unmapped)
Fragments: 59384003 total (58942135 tlen-paired, 5838 hash-paired, 446 singletons, 19927 discordant, 415657 orphans, 18189 too large [>5000 bp], 21756548 duplicates)
Reads: 119647811 total, 61518 skipped (flags/unmapped)
Fragments: 59976627 total (59563629 tlen-paired, 3711 hash-paired, 646 singletons, 16850 discordant, 391791 orphans, 12738 too large [>5000 bp], 21451685 duplicates)
Reads: 130793143 total, 102194 skipped (flags/unmapped)
Fragments: 65689300 total (64635199 tlen-paired, 3591 hash-paired, 555 singletons, 202231 discordant, 847724 orphans, 80314 too large [>5000 bp], 24073938 duplicates)